IL_4V6N_067

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V6N|1|AB|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_067 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.1241

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|C|1686
4V6N|1|AB|G|1687
4V6N|1|AB|U|1688
4V6N|1|AB|A|1689
4V6N|1|AB|A|1690
4V6N|1|AB|C|1691
*
4V6N|1|AB|G|1696
4V6N|1|AB|G|1697
4V6N|1|AB|A|1698
4V6N|1|AB|G|1699
4V6N|1|AB|A|1700
4V6N|1|AB|A|1701
4V6N|1|AB|G|1702

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA