IL_4V6N_068

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

4V6N|1|AB|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_068 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.2568

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V6N|1|AB|U|1712
4V6N|1|AB|A|1713
4V6N|1|AB|U|1714
4V6N|1|AB|G|1715
4V6N|1|AB|U|1716
4V6N|1|AB|A|1717
4V6N|1|AB|G|1718
*
4V6N|1|AB|U|1742
4V6N|1|AB|G|1743
4V6N|1|AB|A|1744
4V6N|1|AB|A|1745
4V6N|1|AB|A|1746

Current chains

Chain AB

23S ribosomal RNA

Nearby chains