IL_4V6N_075

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_075 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.2919

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|U|1864
4V6N|1|AB|U|1865
4V6N|1|AB|A|1866
4V6N|1|AB|G|1867
*
4V6N|1|AB|C|1874
4V6N|1|AB|G|1875
4V6N|1|AB|A|1876
4V6N|1|AB|A|1877
4V6N|1|AB|G|1878

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1