IL_4V6N_080

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CCC*G(2MG)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_080 not in the Motif Atlas

Homologous match to IL_5J7L_322

Geometric discrepancy: 0.2014

The information below is about IL_5J7L_322

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6N|1|AB|C|2064
4V6N|1|AB|C|2065
4V6N|1|AB|C|2066
*
4V6N|1|AB|G|2444
4V6N|1|AB|2MG|2445
4V6N|1|AB|G|2446

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AN

50S ribosomal protein L15

Chain BD

Transfer RNA; tRNA