IL_4V6N_082

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4V6N|1|AB|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_082 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.2286

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V6N|1|AB|U|2081
4V6N|1|AB|A|2082
4V6N|1|AB|G|2083
*
4V6N|1|AB|U|2236
4V6N|1|AB|G|2237
4V6N|1|AB|G|2238
4V6N|1|AB|G|2239

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain AZ

50S ribosomal protein L28