IL_4V6N_083

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_083 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.2082

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4V6N|1|AB|C|2084
4V6N|1|AB|U|2085
4V6N|1|AB|U|2086
4V6N|1|AB|G|2087
*
4V6N|1|AB|C|2232
4V6N|1|AB|U|2233
4V6N|1|AB|G|2234
4V6N|1|AB|G|2235

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain AZ

50S ribosomal protein L28