IL_4V6N_090

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_090 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.2185

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V6N|1|AB|C|2350
4V6N|1|AB|G|2351
4V6N|1|AB|A|2352
4V6N|1|AB|G|2353
*
4V6N|1|AB|C|2364
4V6N|1|AB|G|2365
4V6N|1|AB|A|2366
4V6N|1|AB|G|2367

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L33

Chain A6

50S ribosomal protein L35

Chain AY

50S ribosomal protein L27