IL_4V6N_092

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_092 not in the Motif Atlas

Homologous match to IL_5J7L_336

Geometric discrepancy: 0.5352

The information below is about IL_5J7L_336

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6N|1|AB|C|2456
4V6N|1|AB|PSU|2457
4V6N|1|AB|G|2458
4V6N|1|AB|A|2459
*
4V6N|1|AB|U|2493
4V6N|1|AB|G|2494
4V6N|1|AB|G|2495

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AO

50S ribosomal protein L16

Chain AY

50S ribosomal protein L27

Chain BB

Transfer RNA; tRNA