IL_4V6N_096

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUC*G(CH)GAG

Length

8 nucleotides

Bulged bases

4V6N|1|AB|G|2576, 4V6N|1|AB|A|2577

QA status

Modified nucleotides: CH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_096 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.1648

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4V6N|1|AB|C|2510
4V6N|1|AB|U|2511
4V6N|1|AB|C|2512
*
4V6N|1|AB|G|2574
4V6N|1|AB|CH|2575
4V6N|1|AB|G|2576
4V6N|1|AB|A|2577
4V6N|1|AB|G|2578

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3

Chain AM

50S ribosomal protein L14