IL_4V6N_100

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V6N|1|AB|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_100 not in the Motif Atlas

Homologous match to IL_7RQB_101

Geometric discrepancy: 0.5382

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4V6N|1|AB|C|2591
4V6N|1|AB|G|2592
*
4V6N|1|AB|C|2601
4V6N|1|AB|A|2602
4V6N|1|AB|G|2603

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain AY

50S ribosomal protein L27

Chain BB

Transfer RNA; tRNA

Chain BD

Transfer RNA; tRNA