IL_4V6N_103

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

4V6N|1|AB|A|2726

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_103 not in the Motif Atlas

Homologous match to IL_7A0S_095

Geometric discrepancy: 0.3164

The information below is about IL_7A0S_095

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

4V6N|1|AB|U|2680
4V6N|1|AB|C|2681
4V6N|1|AB|A|2682
4V6N|1|AB|C|2683
4V6N|1|AB|U|2684
*
4V6N|1|AB|A|2725
4V6N|1|AB|A|2726
4V6N|1|AB|A|2727

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AM

50S ribosomal protein L14

Chain AP

50S ribosomal protein L17

Chain AR

50S ribosomal protein L19