IL_4V6N_107

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_107 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.2904

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6N|1|AB|C|2806
4V6N|1|AB|U|2807
4V6N|1|AB|G|2808
4V6N|1|AB|A|2809
4V6N|1|AB|A|2810
4V6N|1|AB|G|2811
*
4V6N|1|AB|C|2889
4V6N|1|AB|G|2890
4V6N|1|AB|U|2891
4V6N|1|AB|G|2892

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3

Chain AU

50S ribosomal protein L22