IL_4V6N_144

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_144 not in the Motif Atlas

Geometric match to IL_5J7L_031

Geometric discrepancy: 0.2422

The information below is about IL_5J7L_031

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V6N|1|BA|G|654
4V6N|1|BA|A|655
*
4V6N|1|BA|U|751
4V6N|1|BA|G|752
4V6N|1|BA|A|753
4V6N|1|BA|C|754

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BK

30S ribosomal protein S8

Chain BR

30S ribosomal protein S15