IL_4V6N_153

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

4V6N|1|BA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_153 not in the Motif Atlas

Homologous match to IL_5J7L_040

Geometric discrepancy: 0.3442

The information below is about IL_5J7L_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V6N|1|BA|G|925
4V6N|1|BA|G|926
4V6N|1|BA|G|927
*
4V6N|1|BA|U|1390
4V6N|1|BA|U|1391

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

mRNA

Chain BJ

30S ribosomal protein S7