IL_4V6N_180

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_180 not in the Motif Atlas

Homologous match to IL_9DFE_015

Geometric discrepancy: 0.1738

The information below is about IL_9DFE_015

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V6N|1|AB|C|672
4V6N|1|AB|C|673
4V6N|1|AB|G|674
*
4V6N|1|AB|C|806
4V6N|1|AB|U|807
4V6N|1|AB|G|808

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AN

50S ribosomal protein L15