IL_4V6N_186

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

4V6N|1|AB|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_186 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.2138

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|G|1666
4V6N|1|AB|G|1667
4V6N|1|AB|A|1668
4V6N|1|AB|A|1669
4V6N|1|AB|C|1670
4V6N|1|AB|U|1671
4V6N|1|AB|A|1672
4V6N|1|AB|G|1673
4V6N|1|AB|G|1674
*
4V6N|1|AB|C|1990
4V6N|1|AB|U|1991
4V6N|1|AB|G|1992
4V6N|1|AB|U|1993
4V6N|1|AB|C|1994

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AM

50S ribosomal protein L14