IL_4V6N_194

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AUGUGUAGGAUAG*CCCUU

Length

18 nucleotides

Bulged bases

4V6N|1|AB|U|2111, 4V6N|1|AB|G|2112, 4V6N|1|AB|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6N|1|AB|A|2108
4V6N|1|AB|U|2109
4V6N|1|AB|G|2110
4V6N|1|AB|U|2111
4V6N|1|AB|G|2112
4V6N|1|AB|U|2113
4V6N|1|AB|A|2114
4V6N|1|AB|G|2115
4V6N|1|AB|G|2116
4V6N|1|AB|A|2117
4V6N|1|AB|U|2118
4V6N|1|AB|A|2119
4V6N|1|AB|G|2120
*
4V6N|1|AB|C|2177
4V6N|1|AB|C|2178
4V6N|1|AB|C|2179
4V6N|1|AB|U|2180
4V6N|1|AB|U|2181

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BN

30S ribosomal protein S11