IL_4V6N_196

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GG*CA(OMC)

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_196 not in the Motif Atlas

Homologous match to IL_9DFE_092

Geometric discrepancy: 0.2329

The information below is about IL_9DFE_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4V6N|1|AB|G|2454
4V6N|1|AB|G|2455
*
4V6N|1|AB|C|2496
4V6N|1|AB|A|2497
4V6N|1|AB|OMC|2498

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AO

50S ribosomal protein L16

Chain AY

50S ribosomal protein L27