IL_4V6N_207

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUGC*(2MG)CC

Length

7 nucleotides

Bulged bases

4V6N|1|BA|U|1049

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_207 not in the Motif Atlas

Homologous match to IL_6CZR_153

Geometric discrepancy: 0.3789

The information below is about IL_6CZR_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6N|1|BA|G|1048
4V6N|1|BA|U|1049
4V6N|1|BA|G|1050
4V6N|1|BA|C|1051
*
4V6N|1|BA|2MG|1207
4V6N|1|BA|C|1208
4V6N|1|BA|C|1209

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BF

30S ribosomal protein S3

Chain BQ

30S ribosomal protein S14