IL_4V6N_215

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_215 not in the Motif Atlas

Homologous match to IL_9DFE_036

Geometric discrepancy: 0.2217

The information below is about IL_9DFE_036

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4V6N|1|AB|U|1004
4V6N|1|AB|C|1005
4V6N|1|AB|C|1006
4V6N|1|AB|C|1007
4V6N|1|AB|A|1008
4V6N|1|AB|A|1009
4V6N|1|AB|A|1010
4V6N|1|AB|G|1011
*
4V6N|1|AB|C|1150
4V6N|1|AB|A|1151

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L13

Chain AS

50S ribosomal protein L20