IL_4V6N_224

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUA*UUGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_224 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3917

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4V6N|1|BA|G|457
4V6N|1|BA|U|458
4V6N|1|BA|A|459
*
4V6N|1|BA|U|472
4V6N|1|BA|U|473
4V6N|1|BA|G|474
4V6N|1|BA|C|475

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BS

30S ribosomal protein S16