3D structure

PDB id
4V6O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
14.7 Å

Loop

Sequence
GGGAUAAC*GCUAAUACC
Length
17 nucleotides
Bulged bases
4V6O|1|AA|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6O|1|AA|G|146
4V6O|1|AA|G|147
4V6O|1|AA|G|148
4V6O|1|AA|A|149
4V6O|1|AA|U|150
4V6O|1|AA|A|151
4V6O|1|AA|A|152
4V6O|1|AA|C|153
*
4V6O|1|AA|G|168
4V6O|1|AA|C|169
4V6O|1|AA|U|170
4V6O|1|AA|A|171
4V6O|1|AA|A|172
4V6O|1|AA|U|173
4V6O|1|AA|A|174
4V6O|1|AA|C|175
4V6O|1|AA|C|176

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AW
30S ribosomal protein S20

Coloring options:

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