IL_4V6O_038

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGGAGCAAAC*GGUAGUC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|AA|G|774
4V6O|1|AA|G|775
4V6O|1|AA|G|776
4V6O|1|AA|A|777
4V6O|1|AA|G|778
4V6O|1|AA|C|779
4V6O|1|AA|A|780
4V6O|1|AA|A|781
4V6O|1|AA|A|782
4V6O|1|AA|C|783
*
4V6O|1|AA|G|799
4V6O|1|AA|G|800
4V6O|1|AA|U|801
4V6O|1|AA|A|802
4V6O|1|AA|G|803
4V6O|1|AA|U|804
4V6O|1|AA|C|805

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S11

Chain AX

30S ribosomal protein S21

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BD

50S ribosomal protein L2