IL_4V6O_044

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

4V6O|1|AA|A|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_044 not in the Motif Atlas

Homologous match to IL_5J7L_042

Geometric discrepancy: 0.4795

The information below is about IL_5J7L_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V6O|1|AA|G|953
4V6O|1|AA|G|954
*
4V6O|1|AA|C|1226
4V6O|1|AA|A|1227
4V6O|1|AA|C|1228

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain AP

30S ribosomal protein S13

Chain AV

30S ribosomal protein S19