IL_4V6O_054

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CUGCC*GGAGGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|AA|C|1158
4V6O|1|AA|U|1159
4V6O|1|AA|G|1160
4V6O|1|AA|C|1161
4V6O|1|AA|C|1162
*
4V6O|1|AA|G|1174
4V6O|1|AA|G|1175
4V6O|1|AA|A|1176
4V6O|1|AA|G|1177
4V6O|1|AA|G|1178
4V6O|1|AA|A|1179
4V6O|1|AA|A|1180
4V6O|1|AA|G|1181

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AE

30S ribosomal protein S2

Chain AJ

30S ribosomal protein S7

Chain AL

30S ribosomal protein S9