IL_4V6O_066

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

UAAC*GAG

Length

7 nucleotides

Bulged bases

4V6O|1|AA|A|1446, 4V6O|1|AA|A|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_066 not in the Motif Atlas

Homologous match to IL_5J7L_065

Geometric discrepancy: 0.5724

The information below is about IL_5J7L_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

4V6O|1|AA|U|1445
4V6O|1|AA|A|1446
4V6O|1|AA|A|1447
4V6O|1|AA|C|1448
*
4V6O|1|AA|G|1455
4V6O|1|AA|A|1456
4V6O|1|AA|G|1457

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

30S ribosomal protein S20