IL_4V6O_070
3D structure
- PDB id
- 4V6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14.7 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6O_070 not in the Motif Atlas
- Geometric match to IL_5TBW_376
- Geometric discrepancy: 0.3696
- The information below is about IL_5TBW_376
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.9
- Basepair signature
- cWW-cSH-cWS-tSW-L-R-cWW-R
- Number of instances in this motif group
- 9
Unit IDs
4V6O|1|BA|A|34
4V6O|1|BA|C|35
4V6O|1|BA|C|36
4V6O|1|BA|C|37
4V6O|1|BA|C|38
*
4V6O|1|BA|G|44
4V6O|1|BA|A|45
4V6O|1|BA|A|46
4V6O|1|BA|C|47
4V6O|1|BA|U|48
Current chains
- Chain BA
- 5S ribomosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L31
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S ribosomal protein L5
- Chain BQ
- 50S ribosomal protein L18
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