IL_4V6O_072

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|G|24
4V6O|1|BB|U|25
4V6O|1|BB|G|26
4V6O|1|BB|G|27
4V6O|1|BB|A|28
4V6O|1|BB|U|29
4V6O|1|BB|G|30
*
4V6O|1|BB|C|510
4V6O|1|BB|U|511
4V6O|1|BB|G|512
4V6O|1|BB|A|513
4V6O|1|BB|A|514
4V6O|1|BB|A|515
4V6O|1|BB|C|516

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L32

Chain BS

50S ribosomal protein L20

Chain BU

50S ribosomal protein L22