3D structure

PDB id
4V6O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
14.7 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6O_097 not in the Motif Atlas
Homologous match to IL_7RQB_029
Geometric discrepancy: 0.2239
The information below is about IL_7RQB_029
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_02509.1
Basepair signature
cWW-tSW-cWS-cSH-tWH-R-R-cWW
Number of instances in this motif group
5

Unit IDs

4V6O|1|BB|G|864
4V6O|1|BB|C|865
4V6O|1|BB|A|866
4V6O|1|BB|C|867
4V6O|1|BB|U|868
*
4V6O|1|BB|A|909
4V6O|1|BB|A|910
4V6O|1|BB|A|911
4V6O|1|BB|C|912

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain BA
5S ribosomal RNA; 5S rRNA
Chain BO
50S ribosomal protein L16

Coloring options:


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