IL_4V6O_104

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4V6O|1|BB|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_104 not in the Motif Atlas

Homologous match to IL_5J7L_277

Geometric discrepancy: 0.219

The information below is about IL_5J7L_277

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V6O|1|BB|C|998
4V6O|1|BB|U|999
4V6O|1|BB|A|1000
4V6O|1|BB|A|1001
4V6O|1|BB|G|1002
*
4V6O|1|BB|C|1153
4V6O|1|BB|G|1154
4V6O|1|BB|A|1155
4V6O|1|BB|A|1156
4V6O|1|BB|G|1157

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L30

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BS

50S ribosomal protein L20