IL_4V6O_105

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

4V6O|1|BB|A|1009

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_105 not in the Motif Atlas

Homologous match to IL_7RQB_037

Geometric discrepancy: 0.2203

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4V6O|1|BB|U|1004
4V6O|1|BB|C|1005
4V6O|1|BB|C|1006
4V6O|1|BB|C|1007
4V6O|1|BB|A|1008
4V6O|1|BB|A|1009
4V6O|1|BB|A|1010
4V6O|1|BB|G|1011
*
4V6O|1|BB|C|1150
4V6O|1|BB|A|1151

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L13

Chain BS

50S ribosomal protein L20