IL_4V6O_106

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4V6O|1|BB|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_106 not in the Motif Atlas

Geometric match to IL_4WF9_038

Geometric discrepancy: 0.2774

The information below is about IL_4WF9_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V6O|1|BB|G|1011
4V6O|1|BB|U|1012
4V6O|1|BB|C|1013
*
4V6O|1|BB|G|1149
4V6O|1|BB|C|1150

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L13

Chain BS

50S ribosomal protein L20

Chain BX

50S ribosomal protein L25