IL_4V6O_127

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GUGUAG*UGAGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_127 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3643

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

4V6O|1|BB|G|1473
4V6O|1|BB|U|1474
4V6O|1|BB|G|1475
4V6O|1|BB|U|1476
4V6O|1|BB|A|1477
4V6O|1|BB|G|1478
*
4V6O|1|BB|U|1513
4V6O|1|BB|G|1514
4V6O|1|BB|A|1515
4V6O|1|BB|G|1516
4V6O|1|BB|G|1517
4V6O|1|BB|C|1518

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains