IL_4V6O_156

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GCUUUGAAG*UGGAGC

Length

15 nucleotides

Bulged bases

4V6O|1|BB|U|2130, 4V6O|1|BB|U|2131, 4V6O|1|BB|G|2157

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|G|2128
4V6O|1|BB|C|2129
4V6O|1|BB|U|2130
4V6O|1|BB|U|2131
4V6O|1|BB|U|2132
4V6O|1|BB|G|2133
4V6O|1|BB|A|2134
4V6O|1|BB|A|2135
4V6O|1|BB|G|2136
*
4V6O|1|BB|U|2155
4V6O|1|BB|G|2156
4V6O|1|BB|G|2157
4V6O|1|BB|A|2158
4V6O|1|BB|G|2159
4V6O|1|BB|C|2160

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L1