IL_4V6O_160

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GC(PSU)GA*UGGC

Length

9 nucleotides

Bulged bases

4V6O|1|BB|G|2458

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|G|2455
4V6O|1|BB|C|2456
4V6O|1|BB|PSU|2457
4V6O|1|BB|G|2458
4V6O|1|BB|A|2459
*
4V6O|1|BB|U|2493
4V6O|1|BB|G|2494
4V6O|1|BB|G|2495
4V6O|1|BB|C|2496

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain AD

Transfer RNA; tRNA

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L16

Chain BY

50S ribosomal protein L27