IL_4V6O_163

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CGG*C(PSU)GG

Length

7 nucleotides

Bulged bases

4V6O|1|BB|G|2581

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_163 not in the Motif Atlas

Homologous match to IL_5J7L_339

Geometric discrepancy: 0.469

The information below is about IL_5J7L_339

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|C|2507
4V6O|1|BB|G|2508
4V6O|1|BB|G|2509
*
4V6O|1|BB|C|2579
4V6O|1|BB|PSU|2580
4V6O|1|BB|G|2581
4V6O|1|BB|G|2582

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain BE

50S ribosomal protein L3