IL_4V6O_164
3D structure
- PDB id
- 4V6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14.7 Å
Loop
- Sequence
- CUC*G(CH)GAG
- Length
- 8 nucleotides
- Bulged bases
- 4V6O|1|BB|A|2577
- QA status
- Modified nucleotides: CH
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6O_164 not in the Motif Atlas
- Geometric match to IL_4KZD_003
- Geometric discrepancy: 0.2756
- The information below is about IL_4KZD_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
4V6O|1|BB|C|2510
4V6O|1|BB|U|2511
4V6O|1|BB|C|2512
*
4V6O|1|BB|G|2574
4V6O|1|BB|CH|2575
4V6O|1|BB|G|2576
4V6O|1|BB|A|2577
4V6O|1|BB|G|2578
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain AB
- Transfer RNA; tRNA
- Chain B3
- 50S ribosomal protein L32
- Chain BE
- 50S ribosomal protein L3
- Chain BM
- 50S ribosomal protein L14
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