IL_4V6O_165

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

4V6O|1|BB|A|2572, 4V6O|1|BB|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_165 not in the Motif Atlas

Homologous match to IL_7RQB_098

Geometric discrepancy: 0.1917

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V6O|1|BB|C|2512
4V6O|1|BB|A|2513
*
4V6O|1|BB|U|2571
4V6O|1|BB|A|2572
4V6O|1|BB|C|2573
4V6O|1|BB|G|2574

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain AD

Transfer RNA; tRNA

Chain BE

50S ribosomal protein L3