IL_4V6O_178

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

4V6O|1|BB|A|2872, 4V6O|1|BB|A|2873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_178 not in the Motif Atlas

Homologous match to IL_7RQB_109

Geometric discrepancy: 0.563

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V6O|1|BB|G|2843
4V6O|1|BB|G|2844
4V6O|1|BB|U|2845
4V6O|1|BB|G|2846
*
4V6O|1|BB|C|2870
4V6O|1|BB|U|2871
4V6O|1|BB|A|2872
4V6O|1|BB|A|2873
4V6O|1|BB|C|2874

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BP

50S ribosomal protein L17

Chain BR

50S ribosomal protein L19