IL_4V6O_185

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GUGAAAUCCC*GGAACUGC

Length

18 nucleotides

Bulged bases

4V6O|1|AA|C|631, 4V6O|1|AA|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|AA|G|604
4V6O|1|AA|U|605
4V6O|1|AA|G|606
4V6O|1|AA|A|607
4V6O|1|AA|A|608
4V6O|1|AA|A|609
4V6O|1|AA|U|610
4V6O|1|AA|C|611
4V6O|1|AA|C|612
4V6O|1|AA|C|613
*
4V6O|1|AA|G|627
4V6O|1|AA|G|628
4V6O|1|AA|A|629
4V6O|1|AA|A|630
4V6O|1|AA|C|631
4V6O|1|AA|U|632
4V6O|1|AA|G|633
4V6O|1|AA|C|634

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S4

Chain AS

30S ribosomal protein S16

Chain AT

30S ribosomal protein S17