3D structure

PDB id
4V6O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
14.7 Å

Loop

Sequence
GU(5MC)*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6O_191 not in the Motif Atlas
Homologous match to IL_5J7L_363
Geometric discrepancy: 0.2201
The information below is about IL_5J7L_363
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4V6O|1|AA|G|1405
4V6O|1|AA|U|1406
4V6O|1|AA|5MC|1407
*
4V6O|1|AA|G|1494
4V6O|1|AA|U|1495
4V6O|1|AA|C|1496

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
Transfer RNA; tRNA
Chain AC
mRNA
Chain AD
Transfer RNA; tRNA
Chain BB
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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