3D structure

PDB id
4V6O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
14.7 Å

Loop

Sequence
UUAAGUGGGAAAC*GGAAGAUGUAACGGGGCUAAA
Length
34 nucleotides
Bulged bases
4V6O|1|BB|G|1026, 4V6O|1|BB|A|1127, 4V6O|1|BB|U|1130, 4V6O|1|BB|A|1134, 4V6O|1|BB|A|1143
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6O|1|BB|U|1018
4V6O|1|BB|U|1019
4V6O|1|BB|A|1020
4V6O|1|BB|A|1021
4V6O|1|BB|G|1022
4V6O|1|BB|U|1023
4V6O|1|BB|G|1024
4V6O|1|BB|G|1025
4V6O|1|BB|G|1026
4V6O|1|BB|A|1027
4V6O|1|BB|A|1028
4V6O|1|BB|A|1029
4V6O|1|BB|C|1030
*
4V6O|1|BB|G|1124
4V6O|1|BB|G|1125
4V6O|1|BB|A|1126
4V6O|1|BB|A|1127
4V6O|1|BB|G|1128
4V6O|1|BB|A|1129
4V6O|1|BB|U|1130
4V6O|1|BB|G|1131
4V6O|1|BB|U|1132
4V6O|1|BB|A|1133
4V6O|1|BB|A|1134
4V6O|1|BB|C|1135
4V6O|1|BB|G|1136
4V6O|1|BB|G|1137
4V6O|1|BB|G|1138
4V6O|1|BB|G|1139
4V6O|1|BB|C|1140
4V6O|1|BB|U|1141
4V6O|1|BB|A|1142
4V6O|1|BB|A|1143
4V6O|1|BB|A|1144

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B7
50S ribosomal protein L36
Chain BE
50S ribosomal protein L3
Chain BH
50S ribosomal protein L6
Chain BL
50S ribosomal protein L13
Chain BO
50S ribosomal protein L16

Coloring options:

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