3D structure

PDB id
4V6O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
14.7 Å

Loop

Sequence
GGG*UCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6O_217 not in the Motif Atlas
Geometric match to IL_1Y27_001
Geometric discrepancy: 0.221
The information below is about IL_1Y27_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4V6O|1|BB|G|2524
4V6O|1|BB|G|2525
4V6O|1|BB|G|2526
*
4V6O|1|BB|U|2537
4V6O|1|BB|C|2538
4V6O|1|BB|C|2539

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B7
50S ribosomal protein L36
Chain BH
50S ribosomal protein L6

Coloring options:


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