IL_4V6O_222

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_222 not in the Motif Atlas

Homologous match to IL_6CZR_405

Geometric discrepancy: 0.577

The information below is about IL_6CZR_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V6O|1|AA|U|249
4V6O|1|AA|A|250
4V6O|1|AA|G|251
4V6O|1|AA|U|252
*
4V6O|1|AA|A|274
4V6O|1|AA|G|275

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S17