IL_4V6O_233

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CUA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_233 not in the Motif Atlas

Geometric match to IL_4WF9_047

Geometric discrepancy: 0.293

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V6O|1|BB|C|1351
4V6O|1|BB|U|1352
4V6O|1|BB|A|1353
*
4V6O|1|BB|U|1379
4V6O|1|BB|G|1380

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2