IL_4V6P_038

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_038 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1777

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V6P|1|AA|C|779
4V6P|1|AA|A|780
4V6P|1|AA|A|781
4V6P|1|AA|A|782
4V6P|1|AA|C|783
*
4V6P|1|AA|G|799
4V6P|1|AA|G|800
4V6P|1|AA|U|801
4V6P|1|AA|A|802
4V6P|1|AA|G|803

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S11

Chain AX

30S ribosomal protein S21

Chain BB

Large subunit ribosomal RNA; LSU rRNA