IL_4V6P_041

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CGGG*UUG

Length

7 nucleotides

Bulged bases

4V6P|1|AA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_041 not in the Motif Atlas

Geometric match to IL_6CZR_122

Geometric discrepancy: 0.2865

The information below is about IL_6CZR_122

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

4V6P|1|AA|C|924
4V6P|1|AA|G|925
4V6P|1|AA|G|926
4V6P|1|AA|G|927
*
4V6P|1|AA|U|1390
4V6P|1|AA|U|1391
4V6P|1|AA|G|1392

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

mRNA

Chain AH

30S ribosomal protein S5

Chain AJ

30S ribosomal protein S7

Chain AX

30S ribosomal protein S21