3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
GUGCUGCAU*AUG(2MG)CC
Length
15 nucleotides
Bulged bases
4V6P|1|AA|U|1049, 4V6P|1|AA|C|1054
QA status
Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6P|1|AA|G|1048
4V6P|1|AA|U|1049
4V6P|1|AA|G|1050
4V6P|1|AA|C|1051
4V6P|1|AA|U|1052
4V6P|1|AA|G|1053
4V6P|1|AA|C|1054
4V6P|1|AA|A|1055
4V6P|1|AA|U|1056
*
4V6P|1|AA|A|1204
4V6P|1|AA|U|1205
4V6P|1|AA|G|1206
4V6P|1|AA|2MG|1207
4V6P|1|AA|C|1208
4V6P|1|AA|C|1209

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
Transfer RNA; tRNA
Chain AC
mRNA
Chain AF
30S ribosomal protein S3
Chain AQ
30S ribosomal protein S14

Coloring options:

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