IL_4V6P_054

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

4V6P|1|AA|A|1257, 4V6P|1|AA|A|1280, 4V6P|1|AA|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|AA|G|1255
4V6P|1|AA|A|1256
4V6P|1|AA|A|1257
4V6P|1|AA|G|1258
*
4V6P|1|AA|C|1277
4V6P|1|AA|G|1278
4V6P|1|AA|G|1279
4V6P|1|AA|A|1280
4V6P|1|AA|C|1281
4V6P|1|AA|C|1282

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S ribosomal protein S3

Chain AL

30S ribosomal protein S9

Chain AM

30S ribosomal protein S10

Chain AQ

30S ribosomal protein S14

Chain B2

50S ribosomal protein L31