IL_4V6P_060

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CAUG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_060 not in the Motif Atlas

Homologous match to IL_6CZR_168

Geometric discrepancy: 0.2412

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

4V6P|1|AA|C|1412
4V6P|1|AA|A|1413
4V6P|1|AA|U|1414
4V6P|1|AA|G|1415
*
4V6P|1|AA|U|1485
4V6P|1|AA|G|1486
4V6P|1|AA|G|1487
4V6P|1|AA|G|1488

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal protein S12

Chain BB

Large subunit ribosomal RNA; LSU rRNA